Keywords :
Polymerase Chain Reaction, Deoxyribose Nucleic Acid, DNA Polymerase
Citation Information :
Jain K, Mehendiratta M, Jindal DG, Bansal M. Polymerase Chain Reaction: A Powerful Diagnostic and Research Tool. 2013; 1 (2):77-84.
To fully understand cellular processes, scientists often examine events at the level of nucleic acids and protein molecules. These studies are complicated by the fact that cells have miniscule amounts of molecules of interest which are too small to be seen. So we require molecular tools to visualize these molecules. Polymerase chain reaction is one such technique widely used in molecular biology and produce quantities that are sufficient to study and visualize. With the advancement in this technique, it has revolutionized the field of research and diagnosis. In this article, we present a review on the principle, basic technique, applications, limitations and recent advances of Polymerase Chain Reaction.
A new approach to the synthesis of polynucleotides: Khorana HG, Tener GM, Moffatt JG, Pol EH. Chem. Ind. London 1956,1523.
Mullis K, Faloona F, Scharf S, Saiki R, Horn G, Erlich H. Specific enzymatic amplification of DNA In vitro: the polymerase chain reaction. Cold Spring Harb Symp Quant Biol. 1986;51:263–73.
Mullis K. The unusual origin of the polymerase chain reaction. Sci Am. 1990;262:56–65.
Hill Philip J and Gordon SAB Stewart. The polymerase chain reaction in molecular and micro-biology. Biotechnology and Genetic Engineering Reviews 1992;10(1):343-78.
Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT et al. Primer directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 1988;239:487–91.
Engelke DR, Krikos A, Bruck ME and Ginsburg D. Purification of Thermus aquaticus DNA polymerase expressed in Escherichia coli. Analytical Biochemistry 1990;191:396–400.
Pluthero FG. Rapid purification of high-activity Taq DNA polymerase. Nucleic Acids Res. 1993;21(20):4850–51.
Wolff K, Schoen ED, Peters-Van Rijn J. Optimizing the generation of random amplified polymorphic DNAs in chrysanthemum. Theor. Appl. Genet. 1993;86:1033–7.
Birren B, Green ED, Klapholz S, Myers RM, Roskams J, eds. Genome Analysis: A Laboratory Manual. Analyzing DNA. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1997, Vol. 1.
Burgmann H, Pesaro M, Widmer F, Zeyer J. A strategy for optimizing quality and quantity of DNA extracted from soil. J Microbiol Methods 2001;45(1):7-20.
Roose-Amsaleg CL, Garnier-Sillam E, Harry M. Extraction and purification of microbial DNA from soil and sediment samples. Appl Soil Ecol 2001;18:47–60.
Yang S and Rothman RE. PCR-based diagnostics for infectious diseases: uses, limitations, and future applications in acute-care settings. Lancet 2004;4(6):337-348.
Rahman MT, Uddin MS, Sultana R, Moue A, Setu M. Polymerase Chain Reaction (PCR): A Short Review. AKMMC J 2013;4(1):30-36
Lijun Wang, Haitong Gu, Xinxin Lu. A rapid low-cost real-time PCR for the detection of klebsiella pneumonia carbapenemase genes. Ann Clin Microbiol Antimicrob 2012;11:9.
Clement J and Heyman P. PCR for diagnosis of viral infections of the central nervous system. Lancet 1997;349:1256
Pearson H and Stirling D. Cloning and Mutagenesis. A Technical Overview. In: Methods in Molecular Biology, PCR Protocols. John M. S. Bartlett and David Stirling (Eds), 2nd ed, 2003, Vol 226, Pg 467-8. Humana Press, Totowa, New Jersey, USA.
Grunenwald H. Optimization of Polymerase Chain Reactions. In: Methods in Molecular Biology, PCR Protocols. Bartlett John MS and Stirling D (Eds), 2nd ed, 2003, Vol 226, Pg 89-100. Humana Press, Totowa, New Jersey, USA.
Roux KH. Optimization and troubleshooting in PCR. Cold Spring Harb Protoc; 2009;4(4):1-6.
Jackson CR, Fedorka Cray PJ, Barret JB. Use of a genus and species specific multiplex PCR for amplification of Enterococci. J Clin Microbiol 2004;42:3558-65.
Templeton KE, Scheltinga SA, Sillekens P, Crielaard JW, Van Dam AP, Goenssens H, et al. Development and clinical evaluation of an internally controlled, single tube multiplex real time PCR assay for detection of Legionella pneumophila and other Legionella species. J Clin Microbiol 2003;41:4016-21.
Jann-Yuan W, Li-Na N, Chin-Sheng C, Chung-Yi H, Shu-Kuan W, Hsin-Chih L, et al. Performance assessment of a Nested-PCR assay and the BD ProbeTec ET system for detection of Microbacterium tuberculosis in clinical specimens. J Clin Microbiol 2004;42:4599-603.
Kitagawa Y, Ueda M, Ando N, Endo M, Ishibiki K, Kobayashi Y. Rapid diagnosis of methicillin-resistant Staphylococcus aureus bacteremia by Nested Polymerase Chain Reaction. Ann Surg 1996;224:665-71.
Ke D, Menard C, Picard FJ, Boissinot M, Ouellette M, Roy PH. Development of conventional and Real time PCR assays for the rapid detection of group B Streptococci. Clin Chem 2000;46:324-31.
Moretti T, Koons B, Budoele B. Enhancement of PCR amplification yield and specificity using AmpliTaq Gold DNA polymerase. Biotechniques 1994;16:1134-7.
Demeke T, Jenkins GR. Influence of DNA extraction methods, PCR inhibitors and quantification methods on real-time PCR assay of biotechnology-derived traits. Anal Bioanal Chem 2010;396(6):1977-90.
Mirhendi H, Diba K, Rezaei A, Jalalizand N, Hosseinpur L, Khodadadi H. Colony PCR is a rapid and sensitive method for DNA amplification in yeasts. Iranian Journal of Public Health 2007;36(1):40-4.
Packeiser H, Lim C, Balagurunathan B, Wu J, Zhao H. An extremely simple and effective colony PCR procedure for bacteria, yeasts and micro algae. Applied Biochemistry and Biotechnology 2013;169(2):695-700.
Darawi MN, Ai-Vyrn C, Ramaswamy K, Hua POJ, Pin TM, Kamaruzzaman SB, et al. Allele specific polymerase chain reaction for detection of Alzheimer.s disease related single nucleotide polymorphisms. BMC Med Genet 2013;14(1):1-8.
Stemmer WPC, Crameri A, Ha KD, Brennan TM, Heyneker HL. Single step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides. Gene 1995;164(1):49-53.
Citaratan M, Tang TH, Tan SC, Hoe CH, Saini R, Tominaga J, et al. Asymmetric PCR for good quality ssDNA generation towards DNA aptamer production. Songklanakarin J Sci Technol 2012;34(2):125-31.
Pierce KE, Sanchez JA, Rice JE, Wangh LJ. Linear-after-the-exponential (LATE)-PCR: Prime design criteria for high yields of specific single-stranded DNA and improved real-time detection. Proc Natl Acad Sci USA 2005;102(24):8609-14.
Pierce KE, Wangh LJ. Linear-after-the-exponential polymerase chain reaction and allied technologies. Real-time detection strategies for rapid, reliable diagnosis from single cells. Methods Mol Med 2007;132:65-85.
Schwartz JJ, Lee C, Shendure J. Accurate gene synthesis with tag-directed retrieval of sequence-verified DNA molecules. Nat Methods 2012;9(9):913-5.
Vincent M, Xu Y, Kong H. Helicase-dependent isothermal DNA amplification. EMBO Rep 2004;5(8):795-800.
Chou Q, Russell M, Birch DE, Raymond J, Bloch W. Prevention of pre-PCR mis-priming and primer dimerization improves low-copy-number amplifications. Nucleic Acids Res 1992;20(7):1717-23.
Kellogg DE, Rybalkin I, Chen S, Mukhamedova N, Vlasik T, Siebert PD, et al. TaqStart Antibody: “hot start” PCR facilitated by a neutralizing monoclonal antibody directed against Taq DNA polymerase. Biotechniques 1994;16(6):1134-7.
Isenbarger TA, Finney M, Rios-Velazquez C, Handelsman J, Ruvkun G. Miniprimer PCR, a new lens for viewing the microbial world. Appl Environ Microbiol 2008;74(3):840-9.
Raoult D, Aboudharam G, Crubezy E, Larrouy G, Ludes B, Drancourt M. Molecular identification by “suicide PCR” of Yersinia pestis as the agent of Medieval black death. Proc Natl Acad Sci USA 2000,97(23):12800-3.